All functions |
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Add TSid where missing in a LiPD file |
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Convert a compatible object into a LiPD Structure |
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Convert a compatible object into a lipd TS Structure |
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Convert a compatible object into a lipd TS Tibble object |
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Convert a compatible object into a lipd TS Tibble long object |
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Convert a compatible object into a multiLiPD Structure |
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Before you place a table, you must have the structure leading up to the location or you'll get errors. Build the structure |
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handle NAs in cbind |
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Neotoma chron conversion metadata |
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Compare the MD5 sums for the queryTable zip between locally stored and current remote |
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Collapse time series into LiPD dataset form |
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Collapses blocks: calibration, physicalSample, hasResolution, These follow the regex format of "<key1>_<key2>" match[[1]][[1]] = full key with underscore and index (ex. "physicalSample_tableName") match[[1]][[2]] = first key (ex. "physicalSample") match[[1]][[3]] = second key (ex. "tableName") |
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Collapses blocks: funding, publication calibration, interpretation |
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Collapse time series column. Compile column entries and place new column in table. |
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Collapse time series section; paleo or chron |
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Collapse time series table root. All keys listed below are known table root keys. |
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Combine interpretations by scope |
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Convert datasetId to url to lipdverse lipd file |
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Create a changelog by comparing two LiPD files |
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Create a column in a LiPD object |
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Create a random Dataset ID for a LiPD dataset |
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Create a Markdown representation of a LiPD changelog |
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Create a random TSid |
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Duplicate a table in a LiPD file |
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Extract time series from LiPD data |
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Find all the time series objects that match a given search expression, and return a new time series with the matching objects Valid operators : ==, =, <=, >=, <, > |
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Format citation from 'pub' portion of LiPD file |
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Get one instance from a LiPD changelog |
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get chronData info from neotoma |
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get geo info from neotoma |
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Get measTables |
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get paleoData info from neotoma |
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get pub info from neotoma |
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Download the remote query table |
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Get the timestamp frmo current version of a LiPD file from it's changelog |
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Get the current version of a LiPD file from it's changelog |
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Get the target table |
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Retreieve the original datasets from the lipd R environment |
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Initialize a changelog for a LiPD object |
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Is this a LiPD object? |
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Is this a LiPD TS object? |
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Is this a LiPD TS Tibble object? |
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Is this a LiPD TS Tibble long object? |
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Is this a multiLiPD object? |
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Convert lipd to neotoma |
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Print a summary of the contents of a LiPD file |
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Print a summary of the contents of a lipd_ts or lipd_ts_tibble |
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Lump metadata variables with other rows in Ts (treeTS) |
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Extends data frames to conserve all columns when merging |
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Print a summary of the contents of a Multi-LiPD |
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Neotoma conversion metadata |
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Convert a neotoma dataset into a LiPD object |
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Download the remote query table |
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Query Table for LiPDverse datasets |
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short print out of single lipd |
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short print out of lipd ts |
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short print out of lipd ts tibble |
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short print out of multi lipd |
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print formatted citations to stdout |
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Extract and print model info |
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Print summary data from Paleo/Chron measurement tables |
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Worker function that sends through the query expressions for finding matching entries in the time series |
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pull variable out of TS object |
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push variable into of TS object |
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Put in paleoData and chronData as the base for this dataset using the oroginal dataset data. |
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Put the target table |
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Query the LiPDverse |
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Find all the time series entries that match a given search expression, and return vector of the indices that match. indices = queryTs(ts, "archiveType == marine sediment") Valid operators : ==, =, <=, >=, <, > |
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Read LiPD files into R workspace |
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Remove ensembles from a LiPD object |
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remove names from lists |
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Replace the query zip file MD5 sums after replacing the query table |
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Remove tables that correspond to 'whichtables' type. These tables will be collapsed next and need a clean slate. |
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Split interpretation by scope |
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standardizeQCsheetValues |
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stripExtension |
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Full summary detail of single lipd |
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full summary of lipd ts |
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full summary of lipd ts tibble |
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full summary of multi lipd |
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Create a data table from a lipd-ts-tibble object |
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create tidy data.frame from TS |
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create tidy data.frame from TS (old version) |
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Convert a LiPD TS object into an equivalent nested tibble |
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Pull a single entry list object ot the top level (internal use) |
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create tidy data.frame from TS |
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Update the changelog entry in a LiPD file with new changes |
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update the query table with most recent lipdverse version |
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Is this a valid LiPD |
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write dataset version to a variable in the LiPD file |