Compare chron ensemble with paleoData age-model

Source: R/plotting.geoChronR.R

Plots the difference of an chron ensembleTable with the paleoData age

plotChronEnsDiff(
  L,
  ageEnsVar = "ageEnsemble",
  age.var = "age",
  depth.var = "depth",
  paleo.num = NA,
  paleo.meas.table.num = NA,
  chron.num = NA,
  model.num = NA,
  ens.table.num = NA,
  max.ensemble.members = NA,
  strict.search = FALSE,
  probs = c(0.025, 0.25, 0.5, 0.75, 0.975),
  x.bin = NA,
  y.bin = NA,
  n.bins = 100,
  color.low = "white",
  color.high = "grey70",
  alp = 1,
  color.line = "Black",
  line.width = 1,
  add.to.plot = ggplot2::ggplot(),
  n.ens.plot = 5,
  color.ens.line = "red",
  alp.ens.line = 0.7
)

Arguments

L

A LiPD object - an R serialization of a single LiPD file. It's a list, and is typically created by `readLipd()`

ageEnsVar

name of the age ensemble variable in the chronData to search for

age.var

name of the age variable in the paleoData to search for

depth.var

name of the depth variable to search for

paleo.num

an integer that corresponds to paleo.numData object (L$paleoData[[?]]) has the measurementTable you want to modify

paleo.meas.table.num

an integer that corresponds to paleo.num measurementTable you want to add the ensemble to?

chron.num

an integer that corresponds to chron.numData object (L$crhonData[[?]]) has the model you want to get the ensemble from

model.num

an integer that corresponds to chron.num model you want to get the ensemble from?

ens.table.num

an integer that corresponds to chron.num model ensembleTable you want to get the ensemble from?

max.ensemble.members

Maximum number of ensemble members to map

strict.search

Use a strict.search to look for the ageEnsemble and depth variables. TRUE(default) or FALSE #' @param probs quantiles to calculate and plot

probs

quantiles to plot with ribbons

x.bin

vector of bin edges over which to bin.

y.bin

vector of bin edges over which to bin.

n.bins

number bins over which to calculate intervals. Used to calculate x.bin if not provided.

color.low

Band color of the outer most band.

color.high

Band color of the inner most band.

alp

Transparency of the band plot

color.line

Line color (following ggplot rules)

line.width

Width of the line

add.to.plot

A ggplot object to add this plot to. Default is ggplot() .

n.ens.plot

Number of ensemble members to plot

color.ens.line

color of the ensemble lines

alp.ens.line

transparency of the lines

Value

A ggplot object

Author

Nick McKay